AMPK promotes mitochondrial biogenesis and function by phosphorylating the epigenetic factors DNMT1, RBBP7, and HAT1.
Science Signaling. 2017 Jan 31;10(464) PubMed
Marin TL, Gongol B, Zhang F, Martin M, Johnson DA, Xiao H, Wang Y, Subramaniam S, Chien S, Shyy JY.
Co-expression Network Approach Reveals Functional Similarities among Diseases Affecting Human Skeletal Muscle.
Frontiers in Physiology. 2017 Dec 1: 8:980. PubMed
Mukund K, Subramaniam S.
Co-expression Network Approach to Studying the Effects of Botulinum Neurotoxin-A.
IEEE/ACM Transactions on Computational Biology & Bioinformatics. 2017 Oct 16:1 PubMed
Mukund K, Ward SR, Lieber RL, Subramaniam S.
Discovering and linking public omics data sets using the Omics Discovery Index
Nature Biotechnology. 2017 May 9 ; 35 (5): 406-409 PubMed
Perez-Riverol Y, Bai M, da Veiga Leprevost F, Squizzato S, Park YM, Haug K, Carroll AJ, Spalding D, Paschall J, Wang M, Del-Toro N, Ternent T, Zhang P, Buso N, Bandeira N, Deutsch EW, Campbell DS, Beavis RC, Salek RM, Sarkans U, Petryszak R, Keays M, Fahy E, Sud M, Subramaniam S, Barbera A, Jiménez RC, Nesvizhskii AI, Sansone SA, Steinbeck C, Lopez R, Vizcaíno JA, Ping P, Hermjakob H.
Epigenetic Regulation: A New Frontier for Biomedical Engineers.
The Annual Review of Biomedical Engineering. 2017 Jun 21; 19: 195-219 PubMed
Chen Z, Li S, Subramaniam S, Shyy JY, Chien S.
Krüppel-Like Factor 4 Regulation of Cholesterol-25-Hydroxylase and Liver X Receptor Mitigates Atherosclerosis Susceptibility.
Circulation. 2017 Oct 3;136 (14):1315-1330. PubMed
Li Z, Martin M, Zhang J, Huang HY, Bai L, Zhang J, Kang J, He M, Li J, Maurya MR, Gupta S, Zhou G, Sangwung P, Xu YJ, Lei T, Huang HD, Jain M, Jain MK, Subramaniam S, Shyy JY.
LINC00341 exerts an anti-inflammatory effect on endothelial cells by repressing VCAM1.
Physiological Genomics. 2017 Jul 1;49 (7):339-345 PubMed
Huang TS, Wang KC, Quon S, Nguyen P, Chang TY, Chen Z, Li YS, Subramaniam S, Shyy JY, Chien S.
Metabolic Phenotypes of Response to Vaccination in Humans.
Cell. 2017 May 18; 169 (5): 862-877. PubMed
Li S, Sullivan NL, Rouphael N, Yu T, Banton S, Maddur MS, McCausland M, Chiu C, Canniff J, Dubey S, Liu K, Tran V, Hagan T, Duraisingham S, Wieland A, Mehta AK, Whitaker JA, Subramaniam S, Jones DP, Sette A, Vora K, Weinberg A, Mulligan MJ, Nakaya HI, Levin M, Ahmed R, Pulendran B.
Systems biology analysis of longitudinal functional response of endothelial cells to shear stress.
Proceedings of the National Academy of Sciences of the United States of America. 2017 Oct 10;114(41):10990-10995. PubMed
Ajami NE, Gupta S, Maurya MR, Nguyen P, Li JY, Shyy JY, Chen Z, Chien S, Subramaniam S.
Three distinct cell populations express extracellular matrix proteins and increase in number during skeletal muscle fibrosis.
American Journal of Physiology – Cell Physiology. 2017 Feb 1; 312 (2): C131-C143. PubMed
Chapman MA, Mukund K, Subramaniam S, Brenner D, Lieber RL.