{"id":251,"date":"2017-04-28T14:47:01","date_gmt":"2017-04-28T21:47:01","guid":{"rendered":"https:\/\/genome.ucsd.edu\/?page_id=251"},"modified":"2019-09-25T11:50:58","modified_gmt":"2019-09-25T18:50:58","slug":"2017-2","status":"publish","type":"page","link":"https:\/\/genome.ucsd.edu\/index.php\/publications-2\/2017-2\/","title":{"rendered":"2017"},"content":{"rendered":"<p><span style=\"color: #000000; font-size: large;\"><b>AMPK promotes mitochondrial biogenesis and function by phosphorylating the epigenetic factors DNMT1, RBBP7, and HAT1. <\/b><\/span><span style=\"color: #008080; font-size: large;\"><br \/>\nScience Signaling. 2017 Jan 31;10(464) <b><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28143904\" target=\"_blank\" rel=\"noopener\"><span style=\"color: #ff5733; font-size: small;\">PubMed<\/span><\/a><\/b><\/span><\/p>\n<p class=\"desc\" style=\"font-size: large;\">Marin TL, Gongol B, Zhang F, Martin M, Johnson DA, Xiao H, Wang Y, Subramaniam S, Chien S, Shyy JY.<\/p>\n<p><span style=\"color: #000000; font-size: large;\"><b>Co-expression Network Approach Reveals Functional Similarities among Diseases Affecting Human Skeletal Muscle.<\/b><\/span><span style=\"color: #008080; font-size: large;\"><br \/>\nFrontiers in Physiology. 2017 Dec 1: 8:980. <b><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC5717538\/\" target=\"_blank\" rel=\"noopener\"><span style=\"color: #ff5733; font-size: small;\">PubMed<\/span><\/a><\/b><\/span><\/p>\n<p class=\"desc\" style=\"font-size: large;\">Mukund K, Subramaniam S.<\/p>\n<p><span style=\"color: #000000; font-size: large;\"><b>Co-expression Network Approach to Studying the Effects of Botulinum Neurotoxin-A.<\/b><\/span><span style=\"color: #008080; font-size: large;\"><br \/>\nIEEE\/ACM Transactions on Computational Biology &amp; Bioinformatics. 2017 Oct 16:1 <b><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29053464\" target=\"_blank\" rel=\"noopener\"><span style=\"color: #ff5733; font-size: small;\">PubMed<\/span><\/a><\/b><\/span><\/p>\n<p class=\"desc\" style=\"font-size: large;\">Mukund K, Ward SR, Lieber RL, Subramaniam S.<\/p>\n<p class=\"title\"><span style=\"color: #000000; font-size: large;\"><b>Discovering and linking public omics data sets using the Omics Discovery Index<\/b><\/span><span style=\"color: #008080; font-size: large;\"><br \/>\nNature Biotechnology. 2017 May 9 ; 35 (5): 406-409 <b><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28486464\" target=\"_blank\" rel=\"noopener\"><span style=\"color: #ff5733; font-size: small;\">PubMed<\/span><\/a><\/b><\/span><\/p>\n<p class=\"desc\" style=\"font-size: large;\">Perez-Riverol Y, Bai M, da Veiga Leprevost F, Squizzato S, Park YM, Haug K, Carroll AJ, Spalding D, Paschall J, Wang M, Del-Toro N, Ternent T, Zhang P, Buso N, Bandeira N, Deutsch EW, Campbell DS, Beavis RC, Salek RM, Sarkans U, Petryszak R, Keays M, Fahy E, Sud M, Subramaniam S, Barbera A, Jim\u00e9nez RC, Nesvizhskii AI, Sansone SA, Steinbeck C, Lopez R, Vizca\u00edno JA, Ping P, Hermjakob H.<\/p>\n<p><span style=\"color: #000000; font-size: large;\"><b>Epigenetic Regulation: A New Frontier for Biomedical Engineers.<\/b><\/span><span style=\"color: #008080; font-size: large;\"><br \/>\nThe Annual Review of Biomedical Engineering. 2017 Jun 21; 19: 195-219 <b><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28301736\" target=\"_blank\" rel=\"noopener\"><span style=\"color: #ff5733; font-size: small;\">PubMed<\/span><\/a><\/b><\/span><\/p>\n<p class=\"desc\" style=\"font-size: large;\">Chen Z, Li S, Subramaniam S, Shyy JY, Chien S.<\/p>\n<p><span style=\"color: #000000; font-size: large;\"><b>Kr\u00fcppel-Like Factor 4 Regulation of Cholesterol-25-Hydroxylase and Liver X Receptor Mitigates Atherosclerosis Susceptibility.<\/b><\/span><span style=\"color: #008080; font-size: large;\"><br \/>\nCirculation. 2017 Oct 3;136 (14):1315-1330. <b><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28794002\" target=\"_blank\" rel=\"noopener\"><span style=\"color: #ff5733; font-size: small;\">PubMed<\/span><\/a><\/b><\/span><\/p>\n<p class=\"desc\" style=\"font-size: large;\">Li Z, Martin M, Zhang J, Huang HY, Bai L, Zhang J, Kang J, He M, Li J, Maurya MR, Gupta S, Zhou G, Sangwung P, Xu YJ, Lei T, Huang HD, Jain M, Jain MK, Subramaniam S, Shyy JY.<\/p>\n<p><span style=\"color: #000000; font-size: large;\"><b>LINC00341 exerts an anti-inflammatory effect on endothelial cells by repressing VCAM1.<\/b><\/span><span style=\"color: #008080; font-size: large;\"><br \/>\nPhysiological Genomics. 2017 Jul 1;49 (7):339-345 <b><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/?term=PMID%3A+28500253\" target=\"_blank\" rel=\"noopener\"><span style=\"color: #ff5733; font-size: small;\">PubMed<\/span><\/a><\/b><\/span><\/p>\n<p class=\"desc\" style=\"font-size: large;\">Huang TS, Wang KC, Quon S, Nguyen P, Chang TY, Chen Z, Li YS, Subramaniam S, Shyy JY, Chien S.<\/p>\n<p><span style=\"color: #000000; font-size: large;\"><b>Metabolic Phenotypes of Response to Vaccination in Humans.<\/b><\/span><span style=\"color: #008080; font-size: large;\"><br \/>\nCell. 2017 May 18; 169 (5): 862-877. <b><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/?term=PMID%3A+28502771\" target=\"_blank\" rel=\"noopener\"><span style=\"color: #ff5733; font-size: small;\">PubMed<\/span><\/a><\/b><\/span><\/p>\n<p class=\"desc\" style=\"font-size: large;\">Li S, Sullivan NL, Rouphael N, Yu T, Banton S, Maddur MS, McCausland M, Chiu C, Canniff J, Dubey S, Liu K, Tran V, Hagan T, Duraisingham S, Wieland A, Mehta AK, Whitaker JA, Subramaniam S, Jones DP, Sette A, Vora K, Weinberg A, Mulligan MJ, Nakaya HI, Levin M, Ahmed R, Pulendran B.<\/p>\n<p><span style=\"color: #000000; font-size: large;\"><b>Systems biology analysis of longitudinal functional response of endothelial cells to shear stress.<\/b><\/span><span style=\"color: #008080; font-size: large;\"><br \/>\nProceedings of the National Academy of Sciences of the United States of America. 2017 Oct 10;114(41):10990-10995. <b><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28973892\" target=\"_blank\" rel=\"noopener\"><span style=\"color: #ff5733; font-size: small;\">PubMed<\/span><\/a><\/b><\/span><\/p>\n<p class=\"desc\" style=\"font-size: large;\">Ajami NE, Gupta S, Maurya MR, Nguyen P, Li JY, Shyy JY, Chen Z, Chien S, Subramaniam S.<\/p>\n<p><span style=\"color: #000000; font-size: large;\"><b>Three distinct cell populations express extracellular matrix proteins and increase in number during skeletal muscle fibrosis.<\/b><\/span><span style=\"color: #008080; font-size: large;\"><br \/>\nAmerican Journal of \u00a0Physiology &#8211;\u00a0Cell Physiology. 2017 Feb 1; 312 (2): C131-C143. <b><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/?term=PMC5336596\" target=\"_blank\" rel=\"noopener\"><span style=\"color: #ff5733; font-size: small;\">PubMed<\/span><\/a><\/b><\/span><\/p>\n<p class=\"desc\" style=\"font-size: large;\">Chapman MA, Mukund K, Subramaniam S, Brenner D, Lieber RL.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>AMPK promotes mitochondrial biogenesis and function by phosphorylating the epigenetic factors DNMT1, RBBP7, and HAT1. Science Signaling. 2017 Jan 31;10(464) PubMed Marin [&hellip;]<\/p>\n","protected":false},"author":10,"featured_media":0,"parent":186,"menu_order":3,"comment_status":"closed","ping_status":"closed","template":"page-templates\/page_fullwidth.php","meta":{"footnotes":""},"class_list":["post-251","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/genome.ucsd.edu\/index.php\/wp-json\/wp\/v2\/pages\/251","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/genome.ucsd.edu\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/genome.ucsd.edu\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/genome.ucsd.edu\/index.php\/wp-json\/wp\/v2\/users\/10"}],"replies":[{"embeddable":true,"href":"https:\/\/genome.ucsd.edu\/index.php\/wp-json\/wp\/v2\/comments?post=251"}],"version-history":[{"count":49,"href":"https:\/\/genome.ucsd.edu\/index.php\/wp-json\/wp\/v2\/pages\/251\/revisions"}],"predecessor-version":[{"id":957,"href":"https:\/\/genome.ucsd.edu\/index.php\/wp-json\/wp\/v2\/pages\/251\/revisions\/957"}],"up":[{"embeddable":true,"href":"https:\/\/genome.ucsd.edu\/index.php\/wp-json\/wp\/v2\/pages\/186"}],"wp:attachment":[{"href":"https:\/\/genome.ucsd.edu\/index.php\/wp-json\/wp\/v2\/media?parent=251"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}