{"id":132,"date":"2017-03-23T09:35:27","date_gmt":"2017-03-23T16:35:27","guid":{"rendered":"https:\/\/genome.ucsd.edu\/?page_id=132"},"modified":"2022-10-24T09:01:01","modified_gmt":"2022-10-24T16:01:01","slug":"2011-2","status":"publish","type":"page","link":"https:\/\/genome.ucsd.edu\/index.php\/publications-2\/2011-2\/","title":{"rendered":"2011"},"content":{"rendered":"

A global clustering algorithm to identify long intergenic non-coding RNA–with applications in mouse macrophages.<\/b><\/span>
\nPLoS One. 2011; 6 (9): e24051 PubMed<\/span><\/a><\/b><\/span><\/p>\n

Garmire LX, Garmire DG, Huang W, Yao J, Glass CK, Subramaniam S.<\/p>\n

Bioinformatics and systems biology of the lipidome.<\/b><\/span>
\nChemical Reviews. 2011 Oct 12; 111 (10): 6452-6490 PubMed<\/span><\/a><\/b><\/span><\/p>\n

Subramaniam S, Fahy E, Gupta S, Sud M, Byrnes RW, Cotter D, Dinasarapu AR, Maurya MR.<\/p>\n

Community detection in biological networks using a variational bayes approach.<\/b><\/span>
\nConference Proceddings of the ISCA 3rd International Conference on Bioinformatics and Computational Biology, BICoB-2011. 2011 Mar 23<\/span><\/p>\n

Narayanan T, Subramaniam S.<\/p>\n

Experimental selection of hypoxia-tolerant Drosophila melanogaster.<\/b><\/span>
\nProc Natl Academy Sci USA. 2011 Feb 8; 108 (6): 2349-2354 PubMed<\/span><\/a><\/b><\/span><\/p>\n

Zhou D, Udpa N, Gersten M, Visk DW, Bashir A, Xue J, Frazer KA, Posakony JW, Subramaniam S, Bafna V, Haddad GG.<\/p>\n

Integration of lipidomics and transcriptomics data towards a systems biology model of sphingolipid metabolism.<\/b><\/span>
\nBMC Systems Biology. 2011 Feb 8; 5:26 PubMed<\/span><\/a><\/b><\/span><\/p>\n

Gupta S, Maurya MR, Merrill AH Jr, Glass CK, Subramaniam S.<\/p>\n

Lipid classification, structures and tools.<\/b><\/span>
\nBiochimica et Biopysica Acta (BBA) – Molecular and Cell Biology Lipids. 2011 Nov; 1811 (11): 637-647 PubMed<\/span><\/a><\/b><\/span><\/p>\n

Fahy E, Cotter D, Sud M, Subramaniam S.<\/p>\n

Modularity detection in protein-protein interaction networks.<\/b><\/span>
\nBMC Research Notes. 2011 Dec 29; 4: 569 PubMed<\/span><\/a><\/b><\/span><\/p>\n

Narayanan T, Gersten M, Subramaniam S, Grama A.<\/p>\n

Mechanisms establishing TLR4-responsive activation states of inflammatory response genes.<\/b><\/span>
\nPLoS Genetics. 2011 Dec; 7 (12): e1002401 PubMed<\/span><\/a><\/b><\/span><\/p>\n

Escoubet-Lozach L, Benner C, Kaikkonen MU, Lozach J, Heinz S, Spann NJ, Crotti A, Stender J, Ghisletti S, Reichart D, Cheng CS, Luna R, Ludka C, Sasik R, Garcia-Bassets I, Hoffmann A, Subramaniam S, Hardiman G, Rosenfeld MG, Glass CK.<\/p>\n

MicroRNA-21 targets peroxisome proliferators-activated receptor-alpha in an autoregulatory loop to modulate flow-induced endothelial inflammation.<\/b><\/span>
\nProc Natl Academy Sci USA. 2011 Jun 21; 108(25): 10355\u201310360 PubMed<\/span><\/a><\/b><\/span><\/span><\/p>\n

Zhou J, Wang KC, Wu W, Subramaniam S, Shyy JY, Chiu JJ, Li JY, Chien S.<\/p>\n

Multi-tissue, selective PPAR\u03b3 modulation of insulin sensitivity and metabolic pathways in obese rats.<\/b><\/span>
\nAmerican Journal of Physiology, Endocrinology & Metabolism. 2011 Jan; 300 (1): E164-174 PubMed<\/span><\/a><\/b><\/span><\/p>\n

Hsiao G, Chapman J, Ofrecio JM, Wilkes J, Resnik JL, Thapar D, Subramaniam S, Sears DD.<\/p>\n

Pathways, networks, and systems medicine–the meeting place of the Aegean and the mind.<\/b><\/span>
\nWiley Interdisciplinary Reviews, Systems Biology & Medicine. 2011 May-Jun;3 (3): 253-254 PubMed<\/span><\/a><\/b><\/span><\/p>\n

Subramaniam S, Nadeau JH.<\/p>\n

Regulatory network of microRNAs in RAW 264.7 macrophage cells.<\/b><\/span>
\nConference Proceedings, 32nd Annual International Conference of the IEEE EMBS. 2010; 2010: 6198-6201 PubMed<\/span><\/a><\/b><\/span><\/p>\n

Garmire LX, Shen Z, Briggs S, Yeo G, Subramaniam S, Glass C.<\/p>\n

Signaling gateway molecule pages–a data model perspective.<\/b><\/span>
\nBioinformatics. 2011 Jun 15; 27 (12): 1736-1738 PubMed<\/span><\/a><\/b><\/span><\/p>\n

Dinasarapu AR, Saunders B, Ozerlat I, Azam K, Subramaniam S.<\/p>\n

Systems physiology–the heart of the matter or a bone of contention?<\/b><\/span>
\nWiley Interdisciplinary Reviews, Systems Biology & Medicine. 2011 Mar-Apr; 3 (2): 127-128 PubMed<\/span><\/a><\/b><\/span><\/p>\n

Subramaniam S, Nadeau JH.<\/p>\n","protected":false},"excerpt":{"rendered":"

A global clustering algorithm to identify long intergenic non-coding RNA–with applications in mouse macrophages. PLoS One. 2011; 6 (9): e24051 PubMed Garmire […]<\/p>\n","protected":false},"author":10,"featured_media":0,"parent":186,"menu_order":8,"comment_status":"closed","ping_status":"closed","template":"page-templates\/page_fullwidth.php","meta":{"footnotes":""},"class_list":["post-132","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/genome.ucsd.edu\/index.php\/wp-json\/wp\/v2\/pages\/132","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/genome.ucsd.edu\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/genome.ucsd.edu\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/genome.ucsd.edu\/index.php\/wp-json\/wp\/v2\/users\/10"}],"replies":[{"embeddable":true,"href":"https:\/\/genome.ucsd.edu\/index.php\/wp-json\/wp\/v2\/comments?post=132"}],"version-history":[{"count":8,"href":"https:\/\/genome.ucsd.edu\/index.php\/wp-json\/wp\/v2\/pages\/132\/revisions"}],"predecessor-version":[{"id":1349,"href":"https:\/\/genome.ucsd.edu\/index.php\/wp-json\/wp\/v2\/pages\/132\/revisions\/1349"}],"up":[{"embeddable":true,"href":"https:\/\/genome.ucsd.edu\/index.php\/wp-json\/wp\/v2\/pages\/186"}],"wp:attachment":[{"href":"https:\/\/genome.ucsd.edu\/index.php\/wp-json\/wp\/v2\/media?parent=132"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}