{"id":128,"date":"2017-03-23T09:16:09","date_gmt":"2017-03-23T16:16:09","guid":{"rendered":"https:\/\/genome.ucsd.edu\/?page_id=128"},"modified":"2019-09-25T11:52:12","modified_gmt":"2019-09-25T18:52:12","slug":"2013-2","status":"publish","type":"page","link":"https:\/\/genome.ucsd.edu\/index.php\/publications-2\/2013-2\/","title":{"rendered":"2013"},"content":{"rendered":"<p class=\"title\"><span style=\"color: #000000; font-size: large;\"><b>25-Hydroxycholesterol activates the integrated stress response to reprogram transcription and translation in macrophages.<\/b><\/span><span style=\"color: #008080; font-size: large;\"><br \/>\nJournal of Biological Chemistry. <span class=\"cit\">2013 Dec 13; 288 (50): 35812\u201335823 <\/span><\/span><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24189069\" target=\"_blank\" rel=\"noopener\">PubMed<\/span><\/a><\/b><\/span><\/p>\n<p class=\"desc\" style=\"font-size: large;\">Shibata N, Carlin AF, Spann NJ, Saijo K, Morello CS, McDonald JG, Romanoski CE, Maurya MR, Kaikkonen MU, Lam MT, Crotti A, Reichart D, Fox JN, Quehenberger O, Raetz CR, Sullards MC, Murphy RC, Merrill AH Jr, Brown HA, Dennis EA, Fahy E, Subramaniam S, Cavener DR, Spector DH, Russell DW, Glass CK.<\/p>\n<p class=\"title\"><span style=\"color: #000000; font-size: large;\"><b>A combined omics study on activated macrophages&#8211;enhanced role of STATs in apoptosis, immunity and lipid metabolism.<\/b><\/span><span style=\"color: #008080; font-size: large;\"><br \/>\nBioinformatics. 2013 Nov 1; 29 (21): 2735-2743<b><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23981351\" target=\"_blank\" rel=\"noopener\"><span style=\"color: #FF5733; font-size: small;\"> PubMed<\/span><\/a><\/b><\/span><\/p>\n<p class=\"desc\" style=\"font-size: large;\">Dinasarapu AR, Gupta S, Ram Maurya M, Fahy E, Min J, Sud M, Gersten MJ, Glass CK, Subramaniam S.<\/p>\n<p class=\"title\"><span style=\"color: #000000; font-size: large;\"><b>Analysis of inflammatory and lipid metabolic networks across RAW264.7 and thioglycolate-elicited macrophages.<\/b><\/span><span style=\"color: #008080; font-size: large;\"><br \/>\nJournal of Lipid Research. 2013 Sep; 54 (9): 2525-2542 <b><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23776196\" target=\"_blank\" rel=\"noopener\"><span style=\"color: #FF5733; font-size: small;\"> PubMed<\/span><\/a><\/b><\/span><\/p>\n<p class=\"desc\" style=\"font-size: large;\">Maurya MR, Gupta S, Li X, Fahy E, Dinasarapu AR, Sud M, Brown HA, Glass CK, Murphy RC, Russell DW, Dennis EA, Subramaniam S.<\/p>\n<p class=\"title\"><span style=\"color: #000000; font-size: large;\"><b>CMAP: Complement Map Database.<\/b><\/span><span style=\"color: #008080; font-size: large;\"><br \/>\nBioinformatics. 2013 Jul 15; 29 (14): 1832-1833 <b><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23661693\" target=\"_blank\" rel=\"noopener\"><span style=\"color: #FF5733; font-size: small;\"> PubMed<\/span><\/a><\/b><\/span><\/p>\n<p class=\"desc\" style=\"font-size: large;\">Yang K, Dinasarapu AR, Reis ES, Deangelis RA, Ricklin D, Subramaniam S, Lambris JD.<\/p>\n<p class=\"title\"><span style=\"color: #000000; font-size: large;\"><b>Community Structure Analysis of Gene Interaction Networks in Duchenne Muscular Dystrophy.<\/b><\/span><span style=\"color: #008080; font-size: large;\"><br \/>\nPLoS One. 2013 Jun 19; 8 (6): e67237 <b><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23840633\" target=\"_blank\" rel=\"noopener\"><span style=\"color: #FF5733; font-size: small;\"> PubMed<\/span><\/a><\/b><\/span><\/p>\n<p class=\"desc\" style=\"font-size: large;\">Narayanan T, Subramaniam S.<\/p>\n<p class=\"title\"><span style=\"color: #000000; font-size: large;\"><b>Developing microRNA screening as a functional genomics tool for disease research.<\/b><\/span><span style=\"color: #008080; font-size: large;\"><br \/>\nFrontiers in Physiology. 2013 Aug 27; 4: 223 <b><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23986717\" target=\"_blank\" rel=\"noopener\"><span style=\"color: #FF5733; font-size: small;\"> PubMed<\/span><\/a><\/b><\/span><\/p>\n<p class=\"desc\" style=\"font-size: large;\">Lemons D, Maurya MR, Subramaniam S, Mercola M.<\/p>\n<p class=\"title\"><span style=\"color: #000000; font-size: large;\"><b>Inferring the effective TOR-dependent network: a computational study in yeast.<\/b><\/span><span style=\"color: #008080; font-size: large;\"><br \/>\nBMC Systems Biology. 2013 Aug 30; 7: 84 <b><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24005029\" target=\"_blank\" rel=\"noopener\"><span style=\"color: #FF5733; font-size: small;\"> PubMed<\/span><\/a><\/b><\/span><\/p>\n<p class=\"desc\" style=\"font-size: large;\">Mohammadi S, Subramaniam S, Grama A.<\/p>\n<p class=\"title\"><span style=\"color: #000000; font-size: large;\"><b>Mechanosensitive microRNAs-role in endothelial responses to shear stress and redox state.<\/b><\/span><span style=\"color: #008080; font-size: large;\"><br \/>\nFree Radical Biology &amp; Medicine. 2013 Sep; 64: 61-8 <b><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23727269\" target=\"_blank\" rel=\"noopener\"><span style=\"color: #FF5733; font-size: small;\"> PubMed<\/span><\/a><\/b><\/span><\/p>\n<p class=\"desc\" style=\"font-size: large;\">Marin T, Gongol B, Chen Z, Woo B, Subramaniam S, Chien S, Shyy JY.<\/p>\n<p class=\"title\"><span style=\"color: #000000; font-size: large;\"><b>Quantitative transcriptomics using designed primer-based amplification.<\/b><\/span><span style=\"color: #008080; font-size: large;\"><br \/>\nScience Reports. 2013 Apr 29; 3: 1740 <b><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23624976\" target=\"_blank\" rel=\"noopener\"><span style=\"color: #FF5733; font-size: small;\"> PubMed<\/span><\/a><\/b><\/span><\/p>\n<p class=\"desc\" style=\"font-size: large;\">Bhargava V, Ko P, Willems E, Mercola M, Subramaniam S.<\/p>\n<p class=\"title\"><span style=\"color: #000000; font-size: large;\"><b>The poor performance of TMM on microRNA-Seq.<\/b><\/span><span style=\"color: #008080; font-size: large;\"><br \/>\nRNA. 2013 Jun; 19 (6): 735-736 <b><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23616641\" target=\"_blank\" rel=\"noopener\"><span style=\"color: #FF5733; font-size: small;\"> PubMed<\/span><\/a><\/b><\/span><\/p>\n<p class=\"desc\" style=\"font-size: large;\">Garmire LX, Subramaniam S.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>25-Hydroxycholesterol activates the integrated stress response to reprogram transcription and translation in macrophages. Journal of Biological Chemistry. 2013 Dec 13; 288 (50): [&hellip;]<\/p>\n","protected":false},"author":10,"featured_media":0,"parent":186,"menu_order":7,"comment_status":"closed","ping_status":"closed","template":"page-templates\/page_fullwidth.php","meta":{"footnotes":""},"class_list":["post-128","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/genome.ucsd.edu\/index.php\/wp-json\/wp\/v2\/pages\/128","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/genome.ucsd.edu\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/genome.ucsd.edu\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/genome.ucsd.edu\/index.php\/wp-json\/wp\/v2\/users\/10"}],"replies":[{"embeddable":true,"href":"https:\/\/genome.ucsd.edu\/index.php\/wp-json\/wp\/v2\/comments?post=128"}],"version-history":[{"count":7,"href":"https:\/\/genome.ucsd.edu\/index.php\/wp-json\/wp\/v2\/pages\/128\/revisions"}],"predecessor-version":[{"id":817,"href":"https:\/\/genome.ucsd.edu\/index.php\/wp-json\/wp\/v2\/pages\/128\/revisions\/817"}],"up":[{"embeddable":true,"href":"https:\/\/genome.ucsd.edu\/index.php\/wp-json\/wp\/v2\/pages\/186"}],"wp:attachment":[{"href":"https:\/\/genome.ucsd.edu\/index.php\/wp-json\/wp\/v2\/media?parent=128"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}